Bioconductor Code: scmeth

Graph of scmeth

82b4ed1 (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 11:18:08 -0400;
3d37259 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 11:18:08 -0400;
6017084 (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:25:45 -0400;
897c945 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:25:45 -0400;
363cbc5 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:04:04 -0400;
4d56c2a (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:04:04 -0400;
5569f96 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 11:02:56 -0400;
39a201a (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 11:02:56 -0400;
a899273 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:59:30 -0400;
a2b9cf1 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:59:30 -0400;
2196961 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:17:10 -0400;
fffdd11 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:17:10 -0400;
c6dbf4e bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:47:22 +0000;
4ea6e62 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:47:22 +0000;
ed99d4d Pass serialized S4 instances thru updateObject() by Hervé Pagès <[email protected]> 2021-11-21 00:52:44 -0500;
041c670 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 16:41:54 +0000;
cb59e2c (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 16:41:54 +0000;
12409eb bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 16:33:28 +0000;
1ad2a18 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 16:33:28 +0000;
4b77980 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 11:32:21 -0400;
cb60498 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 11:32:21 -0400;
85f5ab7 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 19:13:58 +0000;
120f8f3 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 19:13:58 +0000;
f46b4da bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:42:41 -0400;
c00688a (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:10:58 -0400;
b7b86da corrected the error with bsseq object by Divyagash <[email protected]> 2019-06-10 17:12:11 -0400;
c47e337 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <[email protected]> 2019-05-02 12:15:39 -0400;
9846b99 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <[email protected]> 2019-05-02 11:54:10 -0400;
9713607 updated the qcReport with summary by Divyagash <[email protected]> 2019-02-17 16:20:08 -0500;
b7cfe0f Added back the repMask function by Divyagash <[email protected]> 2019-01-09 15:08:41 -0500;
ed6f8e8 updated bs object by Divyagash <[email protected]> 2019-01-07 22:56:15 -0500;
091a232 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <[email protected]> 2019-01-04 13:17:44 -0500;
ece24ba update the repMaks function by Divyagash <[email protected]> 2019-01-04 13:01:01 -0500;
4bc5e47 Added ImmunoOncology tag by Divyagash <[email protected]> 2018-11-29 11:27:18 -0500;
dc512f1 Updtaed genomic features by Divyagash <[email protected]> 2018-11-04 13:12:17 -0500;
1bedea4 Updated featureCoverage function to avoid timeout by Divyagash <[email protected]> 2018-11-03 21:26:22 -0400;
7e5e800 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <[email protected]> 2018-10-30 11:54:39 -0400;
74ff27a bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <[email protected]> 2018-10-30 11:42:08 -0400;
c414692 Updated the functions by Divyagash <[email protected]> 2018-10-21 18:22:21 -0400;
3764abd updated the qcReport by Divyagash <[email protected]> 2018-10-15 07:08:10 -0400;
546098c Updated syntax of R files by Divyagash <[email protected]> 2018-10-09 11:26:44 -0400;
a76d74d Chnaged methylationDist function to show mean methylation by Divyagash <[email protected]> 2018-10-04 12:00:09 -0400;
197ff9e Changed visualization for methylation distribution visualization by Divyagash <[email protected]> 2018-09-19 22:01:30 -0400;
0dd9cfc replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <[email protected]> 2018-08-30 13:55:55 -0400;
e709e53 Changed dependencies of gg packages by Divyagash <[email protected]> 2018-08-06 12:00:22 -0400;
9866dcb fixed downsampling error by Divyagash <[email protected]> 2018-07-15 14:49:26 -0400;
f3770cc edited vignette to correct build erros by Divyagash <[email protected]> 2018-07-03 13:38:13 -0400;
7c2a839 merged the difference by Divyagash <[email protected]> 2018-06-22 12:21:02 -0400;
7eafb54 test the commit history by Divyagash <[email protected]> 2018-06-22 11:48:32 -0400;
a49d27f Resolving conflicts in qcReport by Divyagash <[email protected]> 2018-06-04 12:35:06 -0400;
88892e9 resolving conflict by Divyagash <[email protected]> 2018-06-03 22:50:14 -0400;
355c7d2 Resolving merge conflict by Divyagash <[email protected]> 2018-06-03 15:34:37 -0400;
e4a877a Fixed conflict in qcRport.Rmd by Divyagash <[email protected]> 2018-06-01 23:36:58 -0400;
5d069bf Try2 resolve the conflict by Divyagash <[email protected]> 2018-06-01 17:14:12 -0400;
ee1a9c0 try1 resolving conflict by Divyagash <[email protected]> 2018-06-01 16:58:03 -0400;
6d5cac8 Resolved conflict in rmd file by Divyagash <[email protected]> 2018-06-01 14:48:14 -0400;
40cc605 Resolved conflict with upstream branch by Divyagash <[email protected]> 2018-06-01 14:18:15 -0400;
ad86d90 Changed destination of report example by Divyagash <[email protected]> 2018-06-01 14:13:00 -0400;
271addc updated summary table by Divyagash <[email protected]> 2018-05-22 21:45:40 -0400;
0fe5c63 report function generates summary tables by Divyagash <[email protected]> 2018-05-22 11:15:05 -0400;
4d37b5f check by Divyagash <[email protected]> 2018-05-19 22:08:38 -0400;
eefeb18 Added travis-build badge by Divy Kangeyan <[email protected]> 2018-05-18 23:05:35 -0400;
80d5ce5 (origin/RELEASE_3_7, RELEASE_3_7) Fixed the directory destination of qcReport.html by Divyagash <[email protected]> 2018-06-01 14:37:05 -0400;
1737d86 Updated all functions not to output plots by Divyagash <[email protected]> 2018-05-18 23:35:06 -0400;
77854c6 removed devel from travis by Divyagash <[email protected]> 2018-05-17 23:26:00 -0400;
8f33920 updated input parameter in qcrReport by Divyagash <[email protected]> 2018-05-17 22:50:14 -0400;
519e2c3 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <[email protected]> 2018-04-30 10:41:43 -0400;
fb5735b bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <[email protected]> 2018-04-30 10:35:49 -0400;
fbf7132 Updated the NEWS file by Divyagash <[email protected]> 2018-04-24 16:50:14 -0400;
40e2167 changed mapply in mbiasplot to always return a list by Divyagash <[email protected]> 2018-04-15 10:42:51 -0400;
76bbd44 enabled different genomes for the report function by Divyagash <[email protected]> 2018-04-06 16:31:43 -0400;
265ff38 Added a suggested package by Divyagash <[email protected]> 2018-04-04 09:54:57 -0400;
0c9242d added a suggested package for example by Divyagash <[email protected]> 2018-04-03 14:19:14 -0400;
d6d87be stopped loading annotatr in vignette explicitly by Divyagash <[email protected]> 2018-04-01 20:58:30 -0400;
944a01d Added release version to travis.yml by Divyagash <[email protected]> 2018-04-01 16:32:24 -0400;
8bde4f8 Made the qc report plot consistent by Divyagash <[email protected]> 2018-04-01 16:29:27 -0400;
069cbaf removed not imported packages by Divyagash <[email protected]> 2018-03-24 21:02:39 -0400;
819efe9 add methylation column in mbiasTable by Divyagash <[email protected]> 2018-03-21 20:41:08 -0400;
69ea39d Still trying to implement mbiasPlot by Divyagash <[email protected]> 2018-03-21 17:45:34 -0400;
312b72b Removed any dependency on melt function in mbiasPlot by Divyagash <[email protected]> 2018-03-21 15:08:18 -0400;
a760148 updated cpgDensity in report by Divyagash <[email protected]> 2018-03-21 11:02:01 -0400;
cd495cb removed X..methylation variable in mbiasPlot by Divyagash <[email protected]> 2018-03-20 23:22:16 -0400;
17702d2 updated how the mbias table is generated by Divyagash <[email protected]> 2018-03-20 23:12:07 -0400;
88fa987 updated how the mbias table is generated by Divyagash <[email protected]> 2018-03-20 20:42:10 -0400;
99cf6b2 updated the mbiasPlot Namespace by Divyagash <[email protected]> 2018-03-20 17:13:59 -0400;
72433d7 Removed dependency on dplyr by Divyagash <[email protected]> 2018-03-20 16:15:55 -0400;
6a4a0d3 added additional option in cpgDensity function for small data sets by Divyagash <[email protected]> 2018-03-20 15:13:40 -0400;
e3ac204 Removed select function from mbiasPlot by Divyagash <[email protected]> 2018-03-20 13:26:27 -0400;
30276d5 updated the man file for cpgDensity function by Divyagash <[email protected]> 2018-03-18 23:22:03 -0400;
36b8cb2 Added memory allocation by Divyagash <[email protected]> 2018-03-18 22:48:25 -0400;
04875bc Removed redundant code in cpgDensity function by Divyagash <[email protected]> 2018-03-07 09:54:31 -0500;
b9b288f Removed Repitools dependency from DESCRIPTION by Divyagash <[email protected]> 2018-03-06 10:30:01 -0500;
12ffa4a removed Repitools dependecny by Divyagash <[email protected]> 2018-03-05 23:01:15 -0500;
3bdd3a4 bug fix: Changed the working directory for the qcReport by Divyagash <[email protected]> 2018-03-05 17:41:44 -0500;
1e49b4b Updated according to second review by Divyagash <[email protected]> 2018-02-09 17:42:04 -0500;
020c2ad version bump by Divyagash <[email protected]> 2018-02-06 11:18:37 -0500;
69fbca4 Updated the files according to the review by Divyagash <[email protected]> 2018-02-06 11:16:57 -0500;
be7d411 Updated the package based on review comments. by Divyagash <[email protected]> 2018-01-30 11:00:41 -0500;
27f9ea9 substituted 1: to seq_len by Divyagash <[email protected]> 2018-01-23 16:28:57 -0500;
6fd96e9 Updated the extdata files to be compatible with new HDF5Array package by Divyagash <[email protected]> 2018-01-23 12:52:01 -0500;